Welcome to MSIght’s documentation!
Contents:
- MSIght
- Modules
- MSIght.refactor_affine_transform
- MSIght.refactor_bspline
- MSIght.refactor_common_functions
- MSIght.refactor_bspline
- MSIght.refactor_fragger_process
- MSIght.refactor_bspline
- MSIght.refactor_histology_preprocess
- MSIght.refactor_interpolation
- MSIght.refactor_manual_affine
- MSIght.refactor_manual_affine_transform
- MSIght.refactor_mz_image_extract
- API Reference
display_and_save_image()register_he_msi()perform_bspline()global_proteomics_search()process_fragger()process_fragger_gene()bin_he_image()foreground_extract()foreground_mask_make()load_he_image()preprocess_he()red_channel_extract()smooth_he_image()interpolate_MSI()interpolate_and_visualize()apply_dimensionality_reduction()create_intensity_matrix()load_and_preprocess_imzml()manual_register_he_msi()show_msi_he_coords()manual_register_he_msi()apply_bspline_transform_to_msi()extract_mz_image_transform()overlay_msi_he()