MSIght.refactor_common_functions

Created on Thu Nov 21 15:28:00 2024

@author: lafields2

Functions

apply_dimensionality_reduction(...)

Applies PCA and t-SNE for dimensionality reduction on an intensity matrix.

create_intensity_matrix(coordinates, ...)

Creates an intensity matrix from preprocessed MSI data.

load_and_preprocess_imzml(filename, sigma, ...)

Loads and preprocesses MSI data from an .imzML file by applying Gaussian smoothing and top-hat baseline correction.