MSIght.refactor_histology_preprocess

Created on Fri Nov 15 17:08:52 2024

@author: lafields2

Functions

bin_he_image(threshold_value, red_channel)	Binarizes the red channel of an H&E image using a specified threshold.
foreground_extract(image, foreground_mask)	Extracts the foreground (tissue region) from an H&E image using a binary mask.
foreground_mask_make(image)	Creates a foreground mask by isolating tissue regions from an H&E image using HSV color thresholding.
load_he_image(image_path)	Loads an H&E image from the specified file path.
preprocess_he(image_path, threshold_value, ...)	Preprocesses an H&E image by extracting the tissue region, binarizing, and smoothing it.
red_channel_extract(foreground_image)	Extracts the red channel from the foreground image.
smooth_he_image(thresholded_image)	Applies Gaussian smoothing to a binarized H&E image.