MSIght.refactor_mz_image_extract

Created on Fri Nov 15 17:28:29 2024

@author: lafields2

Functions

apply_bspline_transform_to_msi(...)

Applies a B-spline transformation to an MSI image using SimpleITK.

extract_mz_image_transform(filename, mz, ...)

Extracts an m/z image from an .imzML file, resizes it, and applies a B-spline transformation.

overlay_msi_he(msi_result, sized_he_image, mz)

Overlays an MSI image onto an H&E image and displays the result.