MSIght.refactor_fragger_process

Created on Fri Nov 15 17:19:57 2024

@author: lafields2

Functions

global_proteomics_search(...)	Performs a global proteomics search on FragPipe results by filtering peptides based on mass differences and minimum protein occurrences.
process_fragger(protein_oi_list, ppm_error, ...)	Processes FragPipe PSM reports by filtering peptides based on proteins of interest and calculating mass error thresholds for mass spectrometry integration.
process_fragger_gene(gene_oi_list, ...)	Processes FragPipe PSM reports based on a list of genes of interest and calculates error thresholds for mass spectrometry integration.